STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
N307_06508DNA-binding protein RFX7. (1353 aa)    
Predicted Functional Partners:
N307_05744
DNA-binding protein RFXANK.
    
 
 0.938
N307_10831
Ankyrin repeat family A protein 2.
    
 
 0.925
N307_12105
Serine/threonine-protein kinase Chk2.
   
 0.814
N307_08143
Serine/threonine-protein kinase ATR; Belongs to the PI3/PI4-kinase family.
    
 
 0.699
N307_09137
DNA-binding protein RFX8.
    
 
 0.628
N307_13939
Transcription factor RFX4.
    
 
0.622
N307_09656
Serine/threonine-protein kinase DCLK1; Belongs to the protein kinase superfamily.
     
 0.579
N307_09655
Serine/threonine-protein kinase DCLK1.
     
 0.579
N307_01199
DNA-binding protein Rfx5.
    
 
0.554
N307_05522
Tetratricopeptide repeat protein 25.
    
 
 0.504
Your Current Organism:
Picoides pubescens
NCBI taxonomy Id: 118200
Other names: Dendrocopos pubescens, Downy woodpecker, Dryobates pubescens, P. pubescens
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.