STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
N307_00529ELKS/Rab6-interacting/CAST family member 1. (861 aa)    
Predicted Functional Partners:
N307_14636
Regulating synaptic membrane exocytosis protein 3.
    
 
 0.790
N307_15017
Liprin-alpha-1.
    
 
 0.771
N307_13182
Regulating synaptic membrane exocytosis protein 4.
    
 
 0.676
N307_01409
Uncharacterized protein.
    
 
 0.528
N307_01406
Kazrin.
    
 
 0.528
N307_14148
RIMS-binding protein 2.
   
 
 0.504
N307_01194
Synaptotagmin-2.
   
 
 0.500
N307_07599
Inhibitor of nuclear factor kappa-B kinase subunit beta.
    
 
 0.487
N307_02992
Intersectin-2.
    
 
 0.485
N307_01128
Inhibitor of nuclear factor kappa-B kinase subunit alpha.
    
 
 0.459
Your Current Organism:
Picoides pubescens
NCBI taxonomy Id: 118200
Other names: Dendrocopos pubescens, Downy woodpecker, Dryobates pubescens, P. pubescens
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.