STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
N307_14232Trimeric intracellular cation channel type B-B. (252 aa)    
Predicted Functional Partners:
N307_09552
Semaphorin-6D; Belongs to the semaphorin family.
      
 0.520
N307_00704
Cartilage-associated protein.
      
 0.516
N307_00650
Membrane-bound transcription factor site-2 protease.
      
 0.514
N307_15123
Protein transport protein Sec24D.
      
 0.512
N307_15259
Peptidylprolyl isomerase.
      
 0.422
N307_12200
Cyclic AMP-responsive element-binding protein 3-like 2.
      
 0.416
N307_00768
Prolyl 3-hydroxylase 1.
      
 0.408
N307_07373
Pigment epithelium-derived factor; Belongs to the serpin family.
      
 0.407
N307_00260
Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
      
 0.400
Your Current Organism:
Picoides pubescens
NCBI taxonomy Id: 118200
Other names: Dendrocopos pubescens, Downy woodpecker, Dryobates pubescens, P. pubescens
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.