STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
N307_13415TraB domain-containing protein. (367 aa)    
Predicted Functional Partners:
N307_08424
Histone-lysine N-methyltransferase SETMAR.
      0.695
N307_05544
Cyclin N-terminal domain-containing protein 1.
    
   0.662
N307_07262
Cyclic nucleotide-gated channel cone photoreceptor subunit alpha.
    
   0.662
N307_01169
Protein transport protein Sec61 subunit alpha isoform 1.
    
   0.655
N307_09343
Protein transport protein Sec61 subunit alpha isoform 2.
    
   0.655
N307_13416
Selenoprotein O.
 
      0.598
N307_03304
Protein N-terminal glutamine amidohydrolase.
      
 0.574
N307_01072
Osteopetrosis-associated transmembrane protein 1.
      
 0.574
QTRT2
Queuine tRNA-ribosyltransferase accessory subunit 2; Non-catalytic subunit of the queuine tRNA-ribosyltransferase (TGT) that catalyzes the base-exchange of a guanine (G) residue with queuine (Q) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr), resulting in the hypermodified nucleoside queuosine (7-(((4,5-cis-dihydroxy-2- cyclopenten-1-yl)amino)methyl)-7-deazaguanosine); Belongs to the queuine tRNA-ribosyltransferase family. QTRT2 subfamily.
      
 0.566
N307_03605
Transmembrane emp24 domain-containing protein 6.
      
 0.565
Your Current Organism:
Picoides pubescens
NCBI taxonomy Id: 118200
Other names: Dendrocopos pubescens, Downy woodpecker, Dryobates pubescens, P. pubescens
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.