STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
N307_02544Sphingosine-1-phosphate phosphatase 2. (324 aa)    
Predicted Functional Partners:
N307_05436
Sphingosine-1-phosphate lyase 1.
    
 0.963
N307_13127
Sphingosine kinase 1.
   
 0.908
N307_07542
Ceramide synthase 6.
    
 0.885
N307_09676
3-ketodihydrosphingosine reductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
    
 0.882
N307_11685
Alkaline ceramidase; Hydrolyzes the sphingolipid ceramide into sphingosine and free fatty acid.
     
 0.880
N307_11944
Ceramide synthase 4.
    
 0.879
N307_12609
Ceramide synthase 3.
    
 0.879
N307_11504
Neutral ceramidase.
     
 0.879
N307_05753
Ceramide synthase 1.
    
 0.879
N307_11945
Ceramide synthase 4.
    
 0.873
Your Current Organism:
Picoides pubescens
NCBI taxonomy Id: 118200
Other names: Dendrocopos pubescens, Downy woodpecker, Dryobates pubescens, P. pubescens
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.