STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
N307_10001Riboflavin kinase. (155 aa)    
Predicted Functional Partners:
N307_13632
Bifunctional epoxide hydrolase 2.
  
 
 0.923
N307_08588
Iodotyrosine dehalogenase 1.
    
 0.905
N307_02067
Peroxisomal NADH pyrophosphatase NUDT12.
  
 
 0.889
N307_06574
Protein-S-isoprenylcysteine O-methyltransferase.
     
 0.882
N307_01595
Calcineurin-like phosphoesterase domain-containing protein 1.
    
 0.880
N307_00411
Pseudouridine-5'-monophosphatase.
    
 0.879
N307_08111
Phosphomannomutase; Involved in the synthesis of the GDP-mannose and dolichol- phosphate-mannose required for a number of critical mannosyl transfer reactions.
   
 0.869
N307_05067
Phosphomannomutase; Involved in the synthesis of the GDP-mannose and dolichol- phosphate-mannose required for a number of critical mannosyl transfer reactions.
   
 0.869
N307_00145
N-acylneuraminate-9-phosphatase.
  
 
 0.854
N307_10025
Low molecular weight phosphotyrosine protein phosphatase.
    
  0.850
Your Current Organism:
Picoides pubescens
NCBI taxonomy Id: 118200
Other names: Dendrocopos pubescens, Downy woodpecker, Dryobates pubescens, P. pubescens
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