STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
N307_07249E3 ubiquitin-protein ligase SH3RF1. (741 aa)    
Predicted Functional Partners:
N307_14156
Clathrin heavy chain 1.
    
  0.966
N307_14062
Clathrin heavy chain 1.
    
  0.966
N307_10461
Inactive tyrosine-protein kinase 7; Belongs to the protein kinase superfamily. Tyr protein kinase family.
    
 0.883
N307_02227
Ubiquitin-40S ribosomal protein S27a.
    
 0.881
N307_02029
Cytochrome b-245 heavy chain.
   
 0.867
N307_09395
NADPH oxidase 4.
   
 0.867
N307_05370
NADPH oxidase 1.
   
 0.867
N307_02653
NADPH oxidase 5.
   
 0.867
N307_05369
XK-related protein.
   
 0.867
N307_13433
Vacuolar protein sorting-associated protein VTA1.
    
   0.832
Your Current Organism:
Picoides pubescens
NCBI taxonomy Id: 118200
Other names: Dendrocopos pubescens, Downy woodpecker, Dryobates pubescens, P. pubescens
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.