N307_12978 protein (Picoides pubescens) - STRING interaction network

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Score

N307_12978

WD40 repeat-containing protein SMU1. (505 aa)

Predicted Functional Partners:

N307_09603

0.983

N307_00685

0.939

N307_09040

0.926

N307_03936

0.908

N307_03329

0.900

N307_07368

0.885

LSM8

0.884

N307_03333

0.881

N307_02063

0.866

N307_07561

0.862

Your Current Organism:

Picoides pubescens

NCBI taxonomy Id: 118200
Other names: Dendrocopos pubescens, Downy woodpecker, Dryobates pubescens, P. pubescens

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LSM8	N307_00685	A0A093G801	A0A093GKH0	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA.	Zinc finger matrin-type protein 2.	0.957
LSM8	N307_02063	A0A093G801	A0A093IJH3	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA.	Thioredoxin-like 4A.	0.959
LSM8	N307_03329	A0A093G801	A0A093GFC3	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA.	U5 small nuclear ribonucleoprotein 200 kDa helicase.	0.931
LSM8	N307_03936	A0A093G801	A0A093GGM1	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA.	Pre-mRNA-processing factor 6.	0.992
LSM8	N307_07368	A0A093G801	A0A093GGX0	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA.	Pre-mRNA-processing-splicing factor 8.	0.992
LSM8	N307_09040	A0A093G801	A0A093H533	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA.	Pre-mRNA-splicing factor 38A.	0.781
LSM8	N307_09603	A0A093G801	A0A093G742	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA.	Microfibrillar-associated protein 1.	0.767
LSM8	N307_12978	A0A093G801	A0A093IIV1	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA.	WD40 repeat-containing protein SMU1.	0.884
N307_00685	LSM8	A0A093GKH0	A0A093G801	Zinc finger matrin-type protein 2.	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.957
N307_00685	N307_02063	A0A093GKH0	A0A093IJH3	Zinc finger matrin-type protein 2.	Thioredoxin-like 4A.	0.942
N307_00685	N307_03329	A0A093GKH0	A0A093GFC3	Zinc finger matrin-type protein 2.	U5 small nuclear ribonucleoprotein 200 kDa helicase.	0.938
N307_00685	N307_03936	A0A093GKH0	A0A093GGM1	Zinc finger matrin-type protein 2.	Pre-mRNA-processing factor 6.	0.985
N307_00685	N307_07368	A0A093GKH0	A0A093GGX0	Zinc finger matrin-type protein 2.	Pre-mRNA-processing-splicing factor 8.	0.930
N307_00685	N307_09040	A0A093GKH0	A0A093H533	Zinc finger matrin-type protein 2.	Pre-mRNA-splicing factor 38A.	0.987
N307_00685	N307_09603	A0A093GKH0	A0A093G742	Zinc finger matrin-type protein 2.	Microfibrillar-associated protein 1.	0.998
N307_00685	N307_12978	A0A093GKH0	A0A093IIV1	Zinc finger matrin-type protein 2.	WD40 repeat-containing protein SMU1.	0.939
N307_02063	LSM8	A0A093IJH3	A0A093G801	Thioredoxin-like 4A.	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.959
N307_02063	N307_00685	A0A093IJH3	A0A093GKH0	Thioredoxin-like 4A.	Zinc finger matrin-type protein 2.	0.942
N307_02063	N307_03329	A0A093IJH3	A0A093GFC3	Thioredoxin-like 4A.	U5 small nuclear ribonucleoprotein 200 kDa helicase.	0.962
N307_02063	N307_03936	A0A093IJH3	A0A093GGM1	Thioredoxin-like 4A.	Pre-mRNA-processing factor 6.	0.999