STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
N307_14364Collagen alpha-6(IV) chain. (1592 aa)    
Predicted Functional Partners:
N307_06603
Collagen alpha-1(VIII) chain.
  
 
0.539
N307_01551
Complement C1q subcomponent subunit C.
    
 
0.532
N307_00574
Integrin beta.
    
 0.522
N307_05421
Integrin beta.
    
 0.516
N307_11360
Integrin beta.
    
 0.512
N307_07571
Integrin alpha-6; Belongs to the integrin alpha chain family.
    
 0.509
N307_08892
Fibrillar collagen NC1 domain-containing protein.
  
 
 
0.506
N307_10624
Integrin alpha-1; Belongs to the integrin alpha chain family.
    
 0.502
N307_03626
Melanocyte-stimulating hormone receptor; Receptor for MSH (alpha, beta and gamma) and ACTH. The activity of this receptor is mediated by G proteins which activate adenylate cyclase; Belongs to the G-protein coupled receptor 1 family.
    
 0.499
N307_03624
Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. Belongs to the tubulin family.
    
 0.499
Your Current Organism:
Picoides pubescens
NCBI taxonomy Id: 118200
Other names: Dendrocopos pubescens, Downy woodpecker, Dryobates pubescens, P. pubescens
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.