STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
N307_12019Histone deacetylase 4. (1049 aa)    
Predicted Functional Partners:
N307_00697
Uncharacterized protein.
    
 0.970
N307_04610
AT-rich interactive domain-containing protein 4B.
    
 0.929
N307_08484
AT-rich interactive domain-containing protein 4A.
    
 0.929
N307_10080
Core histone macro-H2A.1.
   
 0.900
N307_01264
Core histone macro-H2A; Variant histone H2A which replaces conventional H2A in a subset of nucleosomes.
   
 0.900
N307_07335
Nuclear receptor corepressor 1.
    
 0.858
N307_10849
Paired amphipathic helix protein Sin3a.
    
 0.841
N307_03567
Paired amphipathic helix protein Sin3b.
    
 0.841
N307_13607
Histone-binding protein RBBP7.
   
 0.840
N307_14663
Histone-binding protein RBBP4.
   
 0.840
Your Current Organism:
Picoides pubescens
NCBI taxonomy Id: 118200
Other names: Dendrocopos pubescens, Downy woodpecker, Dryobates pubescens, P. pubescens
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.