STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
N307_12925Putative ATP-dependent RNA helicase DDX5; Belongs to the DEAD box helicase family. (593 aa)    
Predicted Functional Partners:
N307_03209
Ribonuclease 3.
  
 0.976
N307_08534
Splicing factor 3B subunit 1.
   
 0.959
N307_10731
RNA-binding protein 39.
   
 0.928
N307_12067
Pescadillo.
   
 0.910
N307_05108
Putative ATP-dependent RNA helicase DDX17; Belongs to the DEAD box helicase family.
  
 
0.908
N307_08574
Estrogen receptor.
    
 0.897
N307_09913
ATP-dependent RNA helicase A.
  
 0.881
N307_09914
ATP-dependent RNA helicase A.
  
 0.881
N307_04149
Ribosome biogenesis protein WDR12.
   
 0.860
N307_07827
Guanine nucleotide-binding protein-like 3.
  
 0.856
Your Current Organism:
Picoides pubescens
NCBI taxonomy Id: 118200
Other names: Dendrocopos pubescens, Downy woodpecker, Dryobates pubescens, P. pubescens
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.