STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
N307_15273Alpha-ketoglutarate-dependent dioxygenase alkB 3. (258 aa)    
Predicted Functional Partners:
N307_09486
1,4-alpha-glucan-branching enzyme.
  
 
 0.870
N307_13632
Bifunctional epoxide hydrolase 2.
  
 0.834
N307_00411
Pseudouridine-5'-monophosphatase.
  
 
 0.825
N307_14985
Acid trehalase-like 1.
  
 
 0.818
N307_12534
Protein YIPF.
  
 0.815
N307_00778
Bifunctional UDP-N-acetylglucosamine 2-epimerase/N-acetylmannosamine kinase.
    
 0.798
N307_06936
Cystine/glutamate transporter.
   
 0.785
N307_04630
Solute carrier family 7 member 13.
   
 0.785
N307_05662
Y+L amino acid transporter 2.
   
 0.785
N307_11051
Y+L amino acid transporter 2.
   
 0.785
Your Current Organism:
Picoides pubescens
NCBI taxonomy Id: 118200
Other names: Dendrocopos pubescens, Downy woodpecker, Dryobates pubescens, P. pubescens
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.