STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
N307_13792Vesicle transport protein SEC20. (170 aa)    
Predicted Functional Partners:
N307_08659
Syntaxin-18.
   
 0.977
N307_15481
Vesicle-trafficking protein SEC22b; Belongs to the synaptobrevin family.
   
 0.968
N307_04439
Vesicle-trafficking protein SEC22a; Belongs to the synaptobrevin family.
   
 0.911
N307_11057
Vesicle-trafficking protein SEC22c; Belongs to the synaptobrevin family.
   
 0.911
N307_04023
Neuroblastoma-amplified sequence.
    
 0.879
N307_14600
Granulocyte colony-stimulating factor receptor.
   
 0.857
N307_02249
Beta-soluble NSF attachment protein.
    
 0.792
N307_12233
Sec1 family domain-containing protein 1; Belongs to the STXBP/unc-18/SEC1 family.
    
 
 0.791
N307_01159
Coatomer subunit gamma; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.
     
 0.724
N307_09294
Coatomer subunit gamma-2.
     
 0.724
Your Current Organism:
Picoides pubescens
NCBI taxonomy Id: 118200
Other names: Dendrocopos pubescens, Downy woodpecker, Dryobates pubescens, P. pubescens
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