STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
N307_08871SWI/SNF complex subunit SMARCC1. (843 aa)    
Predicted Functional Partners:
N307_12080
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1.
   
 0.999
N307_09065
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 3.
    
 0.999
N307_07828
Protein polybromo-1.
   
 0.997
N307_01189
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1.
    
 0.996
N307_04278
PHD finger protein 10.
    
 0.994
N307_11481
Bromodomain-containing protein 9.
   
 0.993
N307_05296
Actin-like 6A; Belongs to the actin family.
    
 0.992
N307_11513
AT-rich interactive domain-containing protein 1B.
   
 0.981
N307_11514
AT-rich interactive domain-containing protein 1A.
   
 0.981
N307_04469
Zinc finger protein DPF3.
    
 0.972
Your Current Organism:
Picoides pubescens
NCBI taxonomy Id: 118200
Other names: Dendrocopos pubescens, Downy woodpecker, Dryobates pubescens, P. pubescens
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.