STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
N307_13866E3 ubiquitin-protein ligase RNF170. (260 aa)    
Predicted Functional Partners:
N307_07626
Erlin-2.
    
 
 0.748
N307_06321
Ubiquitin-conjugating enzyme E2 J1.
    
 
 0.648
N307_14328
Carboxymethylenebutenolidase.
     
 0.548
N307_14327
Carboxymethylenebutenolidase.
     
 0.548
N307_04279
UPF0669 protein C6orf120.
      
 0.515
N307_11592
Ubiquinone biosynthesis monooxygenase COQ6.
 
      0.478
N307_08357
Membralin.
      
 0.408
Your Current Organism:
Picoides pubescens
NCBI taxonomy Id: 118200
Other names: Dendrocopos pubescens, Downy woodpecker, Dryobates pubescens, P. pubescens
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.