A1O7_07822 protein (Cladophialophora yegresii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A1O7_07822

26S proteasome regulatory subunit N6. (424 aa)

Predicted Functional Partners:

A1O7_08929

0.999

A1O7_07559

0.999

A1O7_08045

0.999

A1O7_05717

0.999

A1O7_10127

0.999

A1O7_03763

0.999

A1O7_04300

0.999

A1O7_07722

0.999

A1O7_06089

0.999

A1O7_02817

0.999

Your Current Organism:

Cladophialophora yegresii

NCBI taxonomy Id: 1182544
Other names: C. yegresii CBS 114405, Cladophialophora yegresii CBS 114405

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A1O7_02817	A1O7_03763	W9W373	W9VV38	26S protease regulatory subunit 4; Belongs to the AAA ATPase family.	26S proteasome regulatory subunit N12.	0.999
A1O7_02817	A1O7_04300	W9W373	W9VWT4	26S protease regulatory subunit 4; Belongs to the AAA ATPase family.	26S proteasome regulatory subunit N3.	0.907
A1O7_02817	A1O7_05717	W9W373	W9VRE7	26S protease regulatory subunit 4; Belongs to the AAA ATPase family.	26S protease regulatory subunit 8; Belongs to the AAA ATPase family.	0.999
A1O7_02817	A1O7_06089	W9W373	W9W2C1	26S protease regulatory subunit 4; Belongs to the AAA ATPase family.	PCI domain-containing protein.	0.999
A1O7_02817	A1O7_07559	W9W373	W9VNC2	26S protease regulatory subunit 4; Belongs to the AAA ATPase family.	26S proteasome regulatory subunit N10.	0.999
A1O7_02817	A1O7_07722	W9W373	W9VXF0	26S protease regulatory subunit 4; Belongs to the AAA ATPase family.	26S protease regulatory subunit 6A; Belongs to the AAA ATPase family.	0.999
A1O7_02817	A1O7_07822	W9W373	W9WG22	26S protease regulatory subunit 4; Belongs to the AAA ATPase family.	26S proteasome regulatory subunit N6.	0.999
A1O7_02817	A1O7_08045	W9W373	W9VQ32	26S protease regulatory subunit 4; Belongs to the AAA ATPase family.	26S proteasome regulatory subunit rpn11.	0.999
A1O7_02817	A1O7_08929	W9W373	W9VKH2	26S protease regulatory subunit 4; Belongs to the AAA ATPase family.	26S proteasome regulatory subunit RPN1; Acts as a regulatory subunit of the 26 proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins.	0.999
A1O7_02817	A1O7_10127	W9W373	W9VRJ6	26S protease regulatory subunit 4; Belongs to the AAA ATPase family.	Proteasome subunit alpha type.	0.998
A1O7_03763	A1O7_02817	W9VV38	W9W373	26S proteasome regulatory subunit N12.	26S protease regulatory subunit 4; Belongs to the AAA ATPase family.	0.999
A1O7_03763	A1O7_04300	W9VV38	W9VWT4	26S proteasome regulatory subunit N12.	26S proteasome regulatory subunit N3.	0.997
A1O7_03763	A1O7_05717	W9VV38	W9VRE7	26S proteasome regulatory subunit N12.	26S protease regulatory subunit 8; Belongs to the AAA ATPase family.	0.998
A1O7_03763	A1O7_06089	W9VV38	W9W2C1	26S proteasome regulatory subunit N12.	PCI domain-containing protein.	0.999
A1O7_03763	A1O7_07559	W9VV38	W9VNC2	26S proteasome regulatory subunit N12.	26S proteasome regulatory subunit N10.	0.999
A1O7_03763	A1O7_07722	W9VV38	W9VXF0	26S proteasome regulatory subunit N12.	26S protease regulatory subunit 6A; Belongs to the AAA ATPase family.	0.999
A1O7_03763	A1O7_07822	W9VV38	W9WG22	26S proteasome regulatory subunit N12.	26S proteasome regulatory subunit N6.	0.999
A1O7_03763	A1O7_08045	W9VV38	W9VQ32	26S proteasome regulatory subunit N12.	26S proteasome regulatory subunit rpn11.	0.999
A1O7_03763	A1O7_08929	W9VV38	W9VKH2	26S proteasome regulatory subunit N12.	26S proteasome regulatory subunit RPN1; Acts as a regulatory subunit of the 26 proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins.	0.998
A1O7_03763	A1O7_10127	W9VV38	W9VRJ6	26S proteasome regulatory subunit N12.	Proteasome subunit alpha type.	0.998