STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rbnRibonuclease BN; COG1295. (361 aa)    
Predicted Functional Partners:
topA-2
DNA topoisomerase I; COG3569.
  
    0.566
panB
3-methyl-2-oxobutanoate hydroxymethyltransferase; Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is transferred onto alpha- ketoisovalerate to form ketopantoate; Belongs to the PanB family.
       0.499
GKIL_3345
Hypothetical protein.
  
     0.442
GKIL_3748
CsbD family protein; COG3237; Belongs to the UPF0337 (CsbD) family.
 
    0.438
gmd-2
GDP-mannose 4,6-dehydratase; Catalyzes the conversion of GDP-D-mannose to GDP-4-dehydro-6- deoxy-D-mannose.
       0.430
GKIL_3932
Lipid kinase; COG1597.
 
    0.418
Your Current Organism:
Gloeobacter kilaueensis
NCBI taxonomy Id: 1183438
Other names: G. kilaueensis JS1, Gloeobacter kilaueensis JS1, Gloeobacter sp. JS
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.