STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A11Q_1663Hypothetical protein. (239 aa)    
Predicted Functional Partners:
A11Q_1664
Hypothetical protein.
       0.613
A11Q_1385
Hypothetical protein.
  
  
 0.606
rplF
50S ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
    
  0.523
A11Q_1071
Long-chain fatty-acid-CoA ligase; COG0318IQ.
    
 0.505
A11Q_581
menE, O-succinylbenzoate-CoA ligase; COG0318IQ.
    
 0.505
A11Q_1662
Hypothetical protein; COG3829KT.
       0.485
A11Q_2331
Phosphatase; COG0671I.
  
     0.481
A11Q_1666
Hypothetical protein.
  
    0.431
Your Current Organism:
Bdellovibrio exovorus
NCBI taxonomy Id: 1184267
Other names: B. exovorus JSS, Bdellovibrio exovorus JSS, Bdellovibrio exovorus str. JSS, Bdellovibrio exovorus strain JSS, Bdellovibrio sp. JSS
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.