STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAB95158.1Putative ABC transporter ATP-binding protein. (344 aa)    
Predicted Functional Partners:
GAB95157.1
Putative ABC transporter permease protein.
 
  0.960
GAB95156.1
Putative Xre family DNA-binding protein.
 
     0.871
GAB95209.1
Putative ABC transporter permease protein.
  
 
  0.606
GAB97917.1
Putative ABC transporter ATP-binding protein.
 
  
 
0.598
GAB95210.1
Putative ABC transporter permease protein.
  
 
  0.587
livM
Branched-chain amino acid ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
   
  0.578
GAB94905.1
Putative ABC transporter permease protein.
  
 
  0.523
GAB94879.1
Hypothetical protein.
   
  0.520
GAB95490.1
Hypothetical protein.
   
  0.520
GAB97289.1
Hypothetical protein.
   
  0.520
Your Current Organism:
Kineosphaera limosa
NCBI taxonomy Id: 1184609
Other names: K. limosa NBRC 100340, Kineosphaera limosa Lpha5, Kineosphaera limosa NBRC 100340, Kineosphaera limosa str. NBRC 100340, Kineosphaera limosa strain NBRC 100340, [uncultured] High G+C Gram-positive bacterium Lpha5
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