STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pbpAPenicillin-binding protein PbpA. (484 aa)    
Predicted Functional Partners:
rodA
Cell division protein RodA; Belongs to the SEDS family.
 
 0.999
ftsW
Cell division membrane protein FtsW; Belongs to the SEDS family.
 
 0.989
pstP
Serine/threonine protein phosphatase PstP.
  
 0.969
GAB95373.1
Hypothetical protein.
 
   
 0.956
GAB97284.1
Putative penicillin-binding protein.
 
 
 0.951
GAB95372.1
Hypothetical protein.
 
   
 0.942
ftsQ
Cell division protein FtsQ; Essential cell division protein.
  
 
 0.938
pknB-2
Serine/threonine protein kinase PknB.
    
 0.904
ftsI
Cell division protein FtsI.
  
  
0.880
pknB
Serine/threonine protein kinase PknB.
     
 0.858
Your Current Organism:
Kineosphaera limosa
NCBI taxonomy Id: 1184609
Other names: K. limosa NBRC 100340, Kineosphaera limosa Lpha5, Kineosphaera limosa NBRC 100340, Kineosphaera limosa str. NBRC 100340, Kineosphaera limosa strain NBRC 100340, [uncultured] High G+C Gram-positive bacterium Lpha5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.