STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAB96062.1Hypothetical protein. (410 aa)    
Predicted Functional Partners:
GAB96061.1
Hypothetical protein.
 
   0.969
GAB95439.1
Putative Xre family DNA-binding protein.
 
   0.789
GAB94977.1
Putative Xre family DNA-binding protein.
   
 
 0.628
GAB95156.1
Putative Xre family DNA-binding protein.
   
 
 0.628
GAB97008.1
Putative Xre family DNA-binding protein.
   
 
 0.628
vapC-19
Hypothetical protein; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family.
  
     0.505
GAB95356.1
Putative ABC transporter substrate-binding protein.
  
     0.457
murA
UDP-N-acetylglucosamine transferase.
  
 
 0.443
GAB96060.1
Hypothetical protein.
       0.425
GAB96837.1
Hypothetical protein.
  
     0.421
Your Current Organism:
Kineosphaera limosa
NCBI taxonomy Id: 1184609
Other names: K. limosa NBRC 100340, Kineosphaera limosa Lpha5, Kineosphaera limosa NBRC 100340, Kineosphaera limosa str. NBRC 100340, Kineosphaera limosa strain NBRC 100340, [uncultured] High G+C Gram-positive bacterium Lpha5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.