STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAB96090.1Hypothetical protein. (204 aa)    
Predicted Functional Partners:
GAB95579.1
Putative LuxR family transcriptional regulator.
  
    0.686
GAB96481.1
Hypothetical protein.
  
     0.613
GAB95427.1
Hypothetical protein.
  
     0.556
GAB94310.1
Putative LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.540
GAB96246.1
Putative 5'-3' exonuclease.
  
     0.534
GAB97254.1
Hypothetical protein.
  
     0.503
GAB95085.1
Hypothetical protein.
  
     0.500
GAB96852.1
Hypothetical protein.
  
     0.485
rplM
50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.
       0.479
GAB96518.1
Hypothetical protein.
  
     0.461
Your Current Organism:
Kineosphaera limosa
NCBI taxonomy Id: 1184609
Other names: K. limosa NBRC 100340, Kineosphaera limosa Lpha5, Kineosphaera limosa NBRC 100340, Kineosphaera limosa str. NBRC 100340, Kineosphaera limosa strain NBRC 100340, [uncultured] High G+C Gram-positive bacterium Lpha5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.