STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAB96146.1Putative sodium/solute symporter; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family. (494 aa)    
Predicted Functional Partners:
putA
Proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase; Belongs to the aldehyde dehydrogenase family.
  
 
 0.859
GAB96144.1
Hypothetical protein.
 
     0.809
GAB96142.1
Hypothetical protein.
 
     0.784
GAB96145.1
Putative ribonuclease.
  
    0.777
GAB96556.1
Putative sodium/solute symporter; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
  
     0.681
GAB96143.1
Hypothetical protein.
       0.661
GAB96483.1
Putative proline dehydrogenase.
  
  
 0.616
cstA-2
Carbon starvation protein A.
 
    0.600
GAB96141.1
Putative carbohydrate kinase.
 
    0.594
GAB96139.1
Putative aldolase.
 
     0.541
Your Current Organism:
Kineosphaera limosa
NCBI taxonomy Id: 1184609
Other names: K. limosa NBRC 100340, Kineosphaera limosa Lpha5, Kineosphaera limosa NBRC 100340, Kineosphaera limosa str. NBRC 100340, Kineosphaera limosa strain NBRC 100340, [uncultured] High G+C Gram-positive bacterium Lpha5
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