STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAB96160.1Putative Xre family DNA-binding protein. (102 aa)    
Predicted Functional Partners:
GAB96159.1
Hypothetical protein.
       0.814
nadE-2
Glutamine-dependent NAD(+) synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
 
  
  0.666
GAB94249.1
Putative pyruvate--ferredoxin oxidoreductase.
    
 0.598
argA
Amino-acid acetyltransferase; Belongs to the acetyltransferase family.
    
  0.584
GAB96566.1
Hypothetical protein.
  
 
  0.566
GAB96158.1
Hypothetical protein.
       0.561
GAB94419.1
Putative transposase.
  
     0.524
GAB97364.1
Hypothetical protein.
    
 
 0.515
GAB94541.1
Hypothetical protein.
  
     0.499
GAB94418.1
Hypothetical protein.
  
     0.491
Your Current Organism:
Kineosphaera limosa
NCBI taxonomy Id: 1184609
Other names: K. limosa NBRC 100340, Kineosphaera limosa Lpha5, Kineosphaera limosa NBRC 100340, Kineosphaera limosa str. NBRC 100340, Kineosphaera limosa strain NBRC 100340, [uncultured] High G+C Gram-positive bacterium Lpha5
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