STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAB96430.1Putative oxidoreductase. (447 aa)    
Predicted Functional Partners:
dhaM
Dihydroxyacetone kinase phosphotransferase subunit DhaM.
    
 0.909
gltB
Glutamate synthase large subunit.
  
 
 0.881
GAB96084.1
Putative fumarate hydratase class I; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
     
 0.873
GAB96433.1
NAD-dependent epimerase/dehydratase family protein.
 
     0.860
rfbC
dTDP-4-dehydrorhamnose 3,5-epimerase.
  
 
  0.847
GAB96431.1
Hypothetical protein.
 
     0.828
fruB
Multiphosphoryl transfer protein.
    
 0.816
GAB96434.1
Putative glucose-1-phosphate cytidylyltransferase.
       0.793
gpsA
NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family.
  
 
 0.779
dak
Dihydroxyacetone kinase.
    
  0.765
Your Current Organism:
Kineosphaera limosa
NCBI taxonomy Id: 1184609
Other names: K. limosa NBRC 100340, Kineosphaera limosa Lpha5, Kineosphaera limosa NBRC 100340, Kineosphaera limosa str. NBRC 100340, Kineosphaera limosa strain NBRC 100340, [uncultured] High G+C Gram-positive bacterium Lpha5
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