STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fadE-4acyl-CoA dehydrogenase. (400 aa)    
Predicted Functional Partners:
etfA
Electron transfer flavoprotein subunit alpha.
 0.939
GAB94746.1
Putative fatty acid oxidation complex subunit alpha.
  
 0.937
etfA-2
Electron transfer flavoprotein subunit alpha.
 0.933
etfB
Electron transfer flavoprotein subunit beta.
 
 0.920
etfB-2
Electron transfer flavoprotein subunit beta.
 
 
 0.908
GAB96566.1
Hypothetical protein.
  
 
 0.863
GAB94249.1
Putative pyruvate--ferredoxin oxidoreductase.
  
 
 0.836
GAB96762.1
Putative propionyl-CoA carboxylase.
 
 0.802
meaA
Coenzyme B12-dependent mutase.
  
 
 0.774
echA
enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.
   
 0.772
Your Current Organism:
Kineosphaera limosa
NCBI taxonomy Id: 1184609
Other names: K. limosa NBRC 100340, Kineosphaera limosa Lpha5, Kineosphaera limosa NBRC 100340, Kineosphaera limosa str. NBRC 100340, Kineosphaera limosa strain NBRC 100340, [uncultured] High G+C Gram-positive bacterium Lpha5
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