STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
crtLLycopene beta-cyclase. (426 aa)    
Predicted Functional Partners:
crtI
Phytoene dehydrogenase.
 
 
 0.887
crtI-2
Phytoene dehydrogenase.
 
 
 0.887
GAB95394.1
Putative oxidoreductase.
 
  
 0.875
GAB94381.1
Putative oxidoreductase.
 
 
 0.860
GAB98139.1
Putative oxidoreductase.
 
  
 0.852
crtB
Phytoene synthase.
 
 
 0.827
crtB-2
Phytoene synthase.
 
 
 0.819
etfB
Electron transfer flavoprotein subunit beta.
  
 
 0.754
etfB-2
Electron transfer flavoprotein subunit beta.
  
 
 0.754
idi
Isopentenyl-diphosphate Delta-isomerase; Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its highly electrophilic allylic isomer, dimethylallyl diphosphate (DMAPP).
 
 0.701
Your Current Organism:
Kineosphaera limosa
NCBI taxonomy Id: 1184609
Other names: K. limosa NBRC 100340, Kineosphaera limosa Lpha5, Kineosphaera limosa NBRC 100340, Kineosphaera limosa str. NBRC 100340, Kineosphaera limosa strain NBRC 100340, [uncultured] High G+C Gram-positive bacterium Lpha5
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