STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAB97431.1Putative metal-dependent phosphohydrolase. (937 aa)    
Predicted Functional Partners:
GAB98400.1
Putative methyl-accepting chemotaxis protein.
 
 
 0.860
fliY
Putative flagellar motor switch protein FliY.
  
 
  0.833
GAB97452.1
Putative methyl-accepting chemotaxis protein.
   
 0.803
GAB97896.1
Hypothetical protein.
   
 
  0.802
fliF
Putative flagellar M-ring protein; The M ring may be actively involved in energy transduction. Belongs to the FliF family.
   
    0.801
GAB97429.1
Hypothetical protein; Belongs to the CoA-transferase III family.
       0.773
wecC
UDP-N-acetyl-D-mannosamine dehydrogenase; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family.
       0.773
GAB95133.1
Hypothetical protein.
  
 0.718
GAB97144.1
Hypothetical protein.
 
   
 0.694
GAB95427.1
Hypothetical protein.
  
  
  0.662
Your Current Organism:
Kineosphaera limosa
NCBI taxonomy Id: 1184609
Other names: K. limosa NBRC 100340, Kineosphaera limosa Lpha5, Kineosphaera limosa NBRC 100340, Kineosphaera limosa str. NBRC 100340, Kineosphaera limosa strain NBRC 100340, [uncultured] High G+C Gram-positive bacterium Lpha5
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