STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAB97545.1Hypothetical protein. (301 aa)    
Predicted Functional Partners:
GAB97546.1
Putative carbon monoxide dehydrogenase medium subunit.
 
 
 0.966
GAB97547.1
Putative carbon monoxide dehydrogenase large subunit.
 
 
 0.963
GAB97550.1
Hypothetical protein.
 
     0.901
GAB97548.1
Putative carbon monoxide dehydrogenase small subunit.
  
  0.899
GAB97551.1
Hypothetical protein.
 
   
 0.877
GAB97549.1
Hypothetical protein.
 
     0.741
GAB96729.1
Hypothetical protein.
 
     0.433
pyrE
Orotate phosphoribosyltransferase; Catalyzes the transfer of a ribosyl phosphate group from 5- phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP).
     
 0.416
GAB95545.1
Putative major facilitator superfamily transporter.
  
     0.405
Your Current Organism:
Kineosphaera limosa
NCBI taxonomy Id: 1184609
Other names: K. limosa NBRC 100340, Kineosphaera limosa Lpha5, Kineosphaera limosa NBRC 100340, Kineosphaera limosa str. NBRC 100340, Kineosphaera limosa strain NBRC 100340, [uncultured] High G+C Gram-positive bacterium Lpha5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.