STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAB97564.1Hypothetical protein. (303 aa)    
Predicted Functional Partners:
metA
Homoserine O-succinyltransferase; Transfers an acetyl group from acetyl-CoA to L-homoserine, forming acetyl-L-homoserine; Belongs to the MetA family.
       0.581
GAB94879.1
Hypothetical protein.
  
     0.533
GAB94878.1
Putative ABC transporter ATP-binding protein.
  
     0.496
GAB98074.1
Putative ATPase.
  
    0.466
GAB94786.1
Putative TetR family transcriptional regulator.
  
     0.464
GAB97615.1
Putative hydrolase; Belongs to the Nudix hydrolase family.
  
     0.463
GAB95296.1
Hypothetical protein.
  
     0.462
eda
4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate.
       0.411
GAB97567.1
Putative mannitol dehydrogenase.
       0.411
GAB96356.1
Putative peptide ABC transporter substrate-binding protein.
  
     0.410
Your Current Organism:
Kineosphaera limosa
NCBI taxonomy Id: 1184609
Other names: K. limosa NBRC 100340, Kineosphaera limosa Lpha5, Kineosphaera limosa NBRC 100340, Kineosphaera limosa str. NBRC 100340, Kineosphaera limosa strain NBRC 100340, [uncultured] High G+C Gram-positive bacterium Lpha5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.