GAB98195.1 protein (Kineosphaera limosa) - STRING interaction network

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Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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protein homology

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Score

GAB98195.1

Putative enoyl-CoA hydratase. (261 aa)

Predicted Functional Partners:

GAB96681.1

0.974

GAB95675.1

0.927

GAB95147.1

0.909

GAB94580.1

0.856

GAB94249.1

0.841

GAB96566.1

0.831

GAB94746.1

0.782

paaJ

0.774

GAB96409.1

0.756

paaK

0.753

Your Current Organism:

Kineosphaera limosa

NCBI taxonomy Id: 1184609
Other names: K. limosa NBRC 100340, Kineosphaera limosa Lpha5, Kineosphaera limosa NBRC 100340, Kineosphaera limosa str. NBRC 100340, Kineosphaera limosa strain NBRC 100340, [uncultured] High G+C Gram-positive bacterium Lpha5

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
GAB94249.1	GAB94580.1	KILIM_004_00380	KILIM_007_00180	Putative pyruvate--ferredoxin oxidoreductase.	Putative 3-hydroxybutyryl-CoA dehydrogenase.	0.809
GAB94249.1	GAB94746.1	KILIM_004_00380	KILIM_011_00190	Putative pyruvate--ferredoxin oxidoreductase.	Putative fatty acid oxidation complex subunit alpha.	0.897
GAB94249.1	GAB95147.1	KILIM_004_00380	KILIM_016_00880	Putative pyruvate--ferredoxin oxidoreductase.	Putative 3-hydroxyacyl-CoA dehydrogenase.	0.809
GAB94249.1	GAB95675.1	KILIM_004_00380	KILIM_025_00110	Putative pyruvate--ferredoxin oxidoreductase.	Putative 3-hydroxyacyl-CoA dehydrogenase.	0.809
GAB94249.1	GAB96409.1	KILIM_004_00380	KILIM_037_00280	Putative pyruvate--ferredoxin oxidoreductase.	Putative acyl-CoA carboxylase.	0.952
GAB94249.1	GAB96566.1	KILIM_004_00380	KILIM_042_00100	Putative pyruvate--ferredoxin oxidoreductase.	Hypothetical protein.	0.999
GAB94249.1	GAB96681.1	KILIM_004_00380	KILIM_045_00120	Putative pyruvate--ferredoxin oxidoreductase.	Putative 3-hydroxyacyl-CoA dehydrogenase.	0.809
GAB94249.1	GAB98195.1	KILIM_004_00380	KILIM_111_00010	Putative pyruvate--ferredoxin oxidoreductase.	Putative enoyl-CoA hydratase.	0.841
GAB94249.1	paaK	KILIM_004_00380	KILIM_004_00540	Putative pyruvate--ferredoxin oxidoreductase.	phenylacetate-CoA oxygenase subunit PaaK.	0.838
GAB94580.1	GAB94249.1	KILIM_007_00180	KILIM_004_00380	Putative 3-hydroxybutyryl-CoA dehydrogenase.	Putative pyruvate--ferredoxin oxidoreductase.	0.809
GAB94580.1	GAB94746.1	KILIM_007_00180	KILIM_011_00190	Putative 3-hydroxybutyryl-CoA dehydrogenase.	Putative fatty acid oxidation complex subunit alpha.	0.747
GAB94580.1	GAB96409.1	KILIM_007_00180	KILIM_037_00280	Putative 3-hydroxybutyryl-CoA dehydrogenase.	Putative acyl-CoA carboxylase.	0.741
GAB94580.1	GAB96566.1	KILIM_007_00180	KILIM_042_00100	Putative 3-hydroxybutyryl-CoA dehydrogenase.	Hypothetical protein.	0.854
GAB94580.1	GAB98195.1	KILIM_007_00180	KILIM_111_00010	Putative 3-hydroxybutyryl-CoA dehydrogenase.	Putative enoyl-CoA hydratase.	0.856
GAB94746.1	GAB94249.1	KILIM_011_00190	KILIM_004_00380	Putative fatty acid oxidation complex subunit alpha.	Putative pyruvate--ferredoxin oxidoreductase.	0.897
GAB94746.1	GAB94580.1	KILIM_011_00190	KILIM_007_00180	Putative fatty acid oxidation complex subunit alpha.	Putative 3-hydroxybutyryl-CoA dehydrogenase.	0.747
GAB94746.1	GAB95147.1	KILIM_011_00190	KILIM_016_00880	Putative fatty acid oxidation complex subunit alpha.	Putative 3-hydroxyacyl-CoA dehydrogenase.	0.748
GAB94746.1	GAB95675.1	KILIM_011_00190	KILIM_025_00110	Putative fatty acid oxidation complex subunit alpha.	Putative 3-hydroxyacyl-CoA dehydrogenase.	0.752
GAB94746.1	GAB96409.1	KILIM_011_00190	KILIM_037_00280	Putative fatty acid oxidation complex subunit alpha.	Putative acyl-CoA carboxylase.	0.967
GAB94746.1	GAB96566.1	KILIM_011_00190	KILIM_042_00100	Putative fatty acid oxidation complex subunit alpha.	Hypothetical protein.	0.910

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Network Stats

number of nodes:

11

number of edges:

30

average node degree:

5.45

avg. local clustering coefficient:

0.848

expected number of edges:

40

PPI enrichment p-value:

0.951

your network does not have significantly more
interactions than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Biological Process (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0006281

DNA repair

7 of 57

1.56

2.29

3.12e-07

GO:0006284

Base-excision repair

3 of 6

2.17

1.82

0.00031

GO:0006259

DNA metabolic process

8 of 157

1.18

1.44

1.64e-06

GO:0090304

Nucleic acid metabolic process

9 of 301

0.95

1.0

6.50e-06

Molecular Function (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0004527

Exonuclease activity

5 of 28

1.73

2.16

8.06e-06

GO:0140097

Catalytic activity, acting on DNA

8 of 115

1.32

1.78

3.38e-07

GO:0019104

DNA N-glycosylase activity

3 of 7

2.11

1.74

0.00040

GO:0004518

Nuclease activity

6 of 69

1.41

1.72

8.93e-06

GO:0003887

DNA-directed DNA polymerase activity

3 of 13

1.84

1.42

0.0013

(more ...)

KEGG Pathways

pathway

description

count in network

strength

signal

false discovery rate

cdq03410

Base excision repair

6 of 13

2.14

4.17

8.11e-10

Annotated Keywords (UniProt)

keyword

description

count in network

strength

signal

false discovery rate

KW-0326

Glycosidase

3 of 9

2.0

1.47

0.0013

KW-0239

DNA-directed DNA polymerase

2 of 7

1.93

0.9

0.0190

KW-0227

DNA damage

3 of 31

1.46

0.83

0.0165

KW-0378

Hydrolase

6 of 311

0.76

0.49

0.0165

Protein Domains (SMART)

domain

description

count in network

strength

signal

false discovery rate

SM00525

Iron-sulpphur binding domain in DNA-(apurinic or apyrimidinic site) lyase (subfamily of ENDO3)

2 of 2

2.47

1.17

0.0071

SM00278

Helix-hairpin-helix DNA-binding motif class 1

2 of 7

1.93

0.88

0.0210

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