STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EJN56332.1CBS domain containing protein. (212 aa)    
Predicted Functional Partners:
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
  
 0.956
rph
Putative nucleoside triphosphatase, Ham1 family; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation.
    
  0.836
mecA
Adapter protein mecA; Enables the recognition and targeting of unfolded and aggregated proteins to the ClpC protease or to other proteins involved in proteolysis.
  
     0.700
A11Y_32834
Sensor histidine kinase.
  
 
  0.699
EJN56165.1
Peptidase propeptide and ypeb domain-containing protein.
  
     0.694
rpoE
Putative DNA-directed RNA polymerase subunit delta (RNAP delta factor); Participates in both the initiation and recycling phases of transcription. In the presence of the delta subunit, RNAP displays an increased specificity of transcription, a decreased affinity for nucleic acids, and an increased efficiency of RNA synthesis because of enhanced recycling; Belongs to the RpoE family.
  
     0.690
EJN55623.1
Pyridine nucleotide-disulfide oxidoreductase.
    
   0.670
EJN56582.1
Putative Rhodanese-sulfurtransferase.
    
   0.670
EJN56786.1
Integral membrane protein.
 
     0.648
EJN55494.1
Hypothetical protein.
 
     0.636
Your Current Organism:
Lactobacillus coryniformis
NCBI taxonomy Id: 1185325
Other names: L. coryniformis subsp. coryniformis CECT 5711, Lactobacillus coryniformis subsp. coryniformis CECT 5711, Lactobacillus coryniformis subsp. coryniformis str. CECT 5711, Lactobacillus coryniformis subsp. coryniformis strain CECT 5711
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