STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EJN55217.1Riboflavin biosynthesis protein RibF; Belongs to the ribF family. (287 aa)    
Predicted Functional Partners:
EJN56731.1
FMN adenylyltransferase / riboflavin kinase; Belongs to the ribF family.
  
  
 
0.893
A11Y_54915
Oxygen-insensitive NADPH nitroreductase; Belongs to the flavin oxidoreductase frp family.
    
  0.826
A11Y_86096
Nitro/flavin reductase; Belongs to the flavin oxidoreductase frp family.
    
  0.826
coaD
Phosphopantetheine adenylyltransferase; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family.
 
   
 0.743
EJN56817.1
Fumarate reductase, flavoprotein subunit.
    
 0.604
A11Y_21924
Sulfate adenylyltransferase subunit 2.
    
 0.571
cmk
Cytidylate kinase (CK); Cytidine monophosphate kinase; CMP kinase.
  
  
 0.544
A11Y_22737
NADPH-dependent FMN reductase domain protein.
    
 0.526
A11Y_37004
Stress induced DNA binding protein; Belongs to the Dps family.
   
    0.507
A11Y_34931
Uroporphyrinogen-III C-methyltransferase.
     
 0.498
Your Current Organism:
Lactobacillus coryniformis
NCBI taxonomy Id: 1185325
Other names: L. coryniformis subsp. coryniformis CECT 5711, Lactobacillus coryniformis subsp. coryniformis CECT 5711, Lactobacillus coryniformis subsp. coryniformis str. CECT 5711, Lactobacillus coryniformis subsp. coryniformis strain CECT 5711
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