STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A11Y_72678Glycine betaine/carnitine/choline ABC superfamily ATP binding cassette transporter, membrane protein. (222 aa)    
Predicted Functional Partners:
A11Y_72676
Glycine betaine/carnitine/choline ABC superfamily ATP binding cassette transporter; Substrate binding protein.
 
 0.999
EJN55235.1
Glycine betaine/carnitine/choline ABC transporter, ATP-binding protein.
 0.997
A11Y_46912
Glycine betaine/carnitine/choline ABC transporter, ATP-binding protein.
 0.991
EJN55234.1
Glycine betaine/carnitine/choline ABC transporter, permease protein.
 
 
 
0.978
EJN53778.1
Glycine betaine/carnitine/choline ABC transporter, substrate binding and permease protein.
 
 
0.951
A11Y_11941
ABC-type amino acid transport system, permease and periplasmic component.
     
 0.636
EJN55774.1
ABC transporter, permease protein.
     
 0.636
EJN56209.1
Glutamine-binding protein / Glutamine transport system permease protein.
     
 0.636
A11Y_50087
Spermidine/putrescine ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.
   
  0.419
potA
Spermidine/putrescine import ATP-binding protein PotA; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Spermidine/putrescine importer (TC 3.A.1.11.1) family.
   
  0.407
Your Current Organism:
Lactobacillus coryniformis
NCBI taxonomy Id: 1185325
Other names: L. coryniformis subsp. coryniformis CECT 5711, Lactobacillus coryniformis subsp. coryniformis CECT 5711, Lactobacillus coryniformis subsp. coryniformis str. CECT 5711, Lactobacillus coryniformis subsp. coryniformis strain CECT 5711
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.