STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFL49323.1Putative sufE-like protein R01000. (140 aa)    
Predicted Functional Partners:
csd2
Putative cysteine desulfurase Csd; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family.
 
 0.993
AFL52347.1
UPF0051 protein.
 
 
 0.874
csd1
Putative cysteine desulfurase Csd.
 
 
 0.859
sufC
Putative ATP-dependent transporter SufC.
 
 
 0.855
sufD
FeS cluster assembly protein SufD.
 
 
 0.850
AFL52351.1
Putative FeS assembly protein.
 
     0.508
AFL49324.1
Uncharacterized protein R01001.
       0.496
AFL52397.1
Hypothetical protein.
 
     0.404
Your Current Organism:
Sinorhizobium fredii USDA257
NCBI taxonomy Id: 1185652
Other names: S. fredii USDA 257, Sinorhizobium fredii USDA 257, Sinorhizobium fredii str. USDA 257, Sinorhizobium fredii strain USDA 257
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.