STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFL49964.1Putative multidrug export ATP-binding/permease protein. (650 aa)    
Predicted Functional Partners:
AFL48789.1
Erythronolide synthase, modules 3 and 4.
  
 0.738
AFL53355.1
Uncharacterized protein y4bJ.
    
 0.680
dnaK
Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
  
 0.575
msbA1
Lipid A export ATP-binding/permease protein MsbA.
  
 
0.569
AFL52651.1
Putative ABC transporter.
  
 
 0.493
cbbX
Protein CbbX.
   
 0.466
AFL53261.1
Hypothetical protein.
   
 0.466
gmhB
D,D-heptose 1,7-bisphosphate phosphatase.
  
 
 0.444
AFL54036.1
Putative oxidoreductase.
 
 
 0.431
gsiA1
Glutathione import ATP-binding protein GsiA; Belongs to the ABC transporter superfamily.
  
0.413
Your Current Organism:
Sinorhizobium fredii USDA257
NCBI taxonomy Id: 1185652
Other names: S. fredii USDA 257, Sinorhizobium fredii USDA 257, Sinorhizobium fredii str. USDA 257, Sinorhizobium fredii strain USDA 257
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