STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFL51880.1Putative transmembrane protein. (89 aa)    
Predicted Functional Partners:
AFL49328.1
Hypothetical protein.
  
     0.542
AFL51879.1
Putative lactoylglutathione lyase.
       0.533
AFL48973.1
Hypothetical protein.
  
     0.528
AFL49334.1
Hypothetical protein.
  
     0.484
AFL49333.1
Hypothetical protein.
  
     0.476
AFL51837.1
Hypothetical protein.
  
     0.456
AFL51878.1
Ribonuclease J.
       0.451
AFL48758.1
Hypothetical protein.
  
     0.447
birA
Biotin transcriptional regulator bifunctional protein BirA.
       0.425
AFL53565.1
Putative polysaccharide export-like protein.
  
     0.424
Your Current Organism:
Sinorhizobium fredii USDA257
NCBI taxonomy Id: 1185652
Other names: S. fredii USDA 257, Sinorhizobium fredii USDA 257, Sinorhizobium fredii str. USDA 257, Sinorhizobium fredii strain USDA 257
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.