STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_001293685_02729Unannotated protein. (90 aa)    
Predicted Functional Partners:
GCA_001293685_01919
Unannotated protein.
 
 0.860
GCA_001293685_02745
Unannotated protein.
  
 0.837
GCA_001293685_01834
Unannotated protein.
    
 0.836
GCA_001293685_01321
Unannotated protein.
  
 0.822
GCA_001293685_02264
Unannotated protein.
  
0.805
GCA_001293685_01070
Unannotated protein.
 
 0.796
GCA_001293685_01838
Unannotated protein.
    
 0.673
GCA_001293685_01202
Unannotated protein.
    
  0.628
GCA_001293685_01664
Unannotated protein.
    
 0.624
GCA_001293685_03071
Unannotated protein.
    
 0.624
Your Current Organism:
Desulfatitalea tepidiphila
NCBI taxonomy Id: 1185843
Other names: D. tepidiphila, DSM 23472, Desulfatitalea tepidiphila Higashioka et al. 2013, NBRC 107166, strain S28bF, sulfate-reducing bacterium strain S28OL1, sulfate-reducing bacterium strain S28OL2, sulfate-reducing bacterium strain S28bF
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.