STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_001293685_03252Unannotated protein. (314 aa)    
Predicted Functional Partners:
GCA_001293685_02388
Unannotated protein.
 
 0.940
GCA_001293685_02429
Unannotated protein.
   
 0.851
GCA_001293685_03595
Unannotated protein.
  
 
 0.814
GCA_001293685_04855
Unannotated protein.
 
   
 0.813
GCA_001293685_03820
Unannotated protein.
  
 0.793
GCA_001293685_04562
Unannotated protein.
     
 0.738
GCA_001293685_03253
Unannotated protein.
    
 0.727
GCA_001293685_00240
Unannotated protein.
    
 0.690
GCA_001293685_01108
Unannotated protein.
    
 0.690
GCA_001293685_03809
Unannotated protein.
 
  
 0.661
Your Current Organism:
Desulfatitalea tepidiphila
NCBI taxonomy Id: 1185843
Other names: D. tepidiphila, DSM 23472, Desulfatitalea tepidiphila Higashioka et al. 2013, NBRC 107166, strain S28bF, sulfate-reducing bacterium strain S28OL1, sulfate-reducing bacterium strain S28OL2, sulfate-reducing bacterium strain S28bF
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.