STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_001293685_03884Unannotated protein. (398 aa)    
Predicted Functional Partners:
GCA_001293685_04668
Unannotated protein.
    
 0.785
GCA_001293685_03603
Unannotated protein.
    
  0.636
GCA_001293685_03883
Unannotated protein.
       0.592
GCA_001293685_03449
Unannotated protein.
    
   0.567
GCA_001293685_00203
Unannotated protein.
   
 
 0.544
GCA_001293685_03621
Unannotated protein.
   
 
 0.544
GCA_001293685_04687
Unannotated protein.
   
 
 0.544
GCA_001293685_03940
Unannotated protein.
    
  0.505
GCA_001293685_04688
Unannotated protein.
   
 
 0.499
GCA_001293685_04689
Unannotated protein.
   
 
 0.499
Your Current Organism:
Desulfatitalea tepidiphila
NCBI taxonomy Id: 1185843
Other names: D. tepidiphila, DSM 23472, Desulfatitalea tepidiphila Higashioka et al. 2013, NBRC 107166, strain S28bF, sulfate-reducing bacterium strain S28OL1, sulfate-reducing bacterium strain S28OL2, sulfate-reducing bacterium strain S28bF
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.