STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BN8_00055Signal transduction histidine kinase, LytS. (1016 aa)    
Predicted Functional Partners:
BN8_00056
Sensory transduction protein lytT.
 
  0.961
BN8_02835
Putative response regulatory protein VC_A0850.
  
  0.826
BN8_02979
Putative response regulatory protein VV2_1193.
  
  0.826
BN8_03365
Putative response regulatory protein ypdB.
  
  0.818
BN8_01162
Putative response regulatory protein VV2_1193.
  
  0.816
BN8_02070
Putative response regulatory protein VV2_1193.
  
  0.816
BN8_01080
Two component transcriptional regulator, LytTR family.
  
  0.813
BN8_03133
Sensory transduction protein lytT.
  
  0.812
BN8_01044
Sensory transduction protein lytT.
  
  0.811
BN8_06479
Sensory transduction protein lytT.
  
  0.811
Your Current Organism:
Fibrisoma limi
NCBI taxonomy Id: 1185876
Other names: F. limi BUZ 3, Fibrisoma limi BUZ 3, Fibrisoma limi str. BUZ 3, Fibrisoma limi strain BUZ 3, Flexibacteraceae bacterium BUZ 3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.