STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BN8_00148Mannonate dehydratase; Catalyzes the dehydration of D-mannonate. (368 aa)    
Predicted Functional Partners:
uxaC-2
Glucuronate isomerase.
 
  
 0.902
uxaC
Glucuronate isomerase.
 
  
 0.900
BN8_03181
PfkB domain protein.
 
  
 0.895
BN8_03183
Mannitol dehydrogenase domain protein.
 
 0.778
uxaA
Altronate hydrolase.
 
 
 0.757
uxuA
Mannonate dehydratase; Catalyzes the dehydration of D-mannonate.
  
  
 
0.751
BN8_03503
Sugar-phosphate isomerase, RpiB/LacA/LacB family.
   
 
  0.689
BN8_06694
6-phosphogluconate dehydrogenase, decarboxylating.
    
  0.665
BN8_00149
Hypothetical protein.
       0.664
BN8_00150
TonB-dependent receptor plug.
       0.592
Your Current Organism:
Fibrisoma limi
NCBI taxonomy Id: 1185876
Other names: F. limi BUZ 3, Fibrisoma limi BUZ 3, Fibrisoma limi str. BUZ 3, Fibrisoma limi strain BUZ 3, Flexibacteraceae bacterium BUZ 3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.