STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BN8_00877Protein of unknown function DUF214. (790 aa)    
Predicted Functional Partners:
BN8_00902
ABC transporter related protein.
 
   0.891
BN8_04029
ABC transporter related protein.
 
   0.816
BN8_00904
Efflux transporter, RND family, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
   0.796
BN8_00908
Histidine kinase.
 
     0.762
BN8_03103
ABC transporter related protein.
 
   0.711
BN8_00878
Protein of unknown function DUF214.
 
 
 
0.652
BN8_05416
Outer membrane lipoprotein carrier protein LolA.
   
   0.632
BN8_00876
Protein of unknown function DUF214.
 
   
0.623
BN8_06549
Sigma 54 interacting domain protein.
  
   0.621
BN8_05103
ABC transporter related protein.
  
   0.617
Your Current Organism:
Fibrisoma limi
NCBI taxonomy Id: 1185876
Other names: F. limi BUZ 3, Fibrisoma limi BUZ 3, Fibrisoma limi str. BUZ 3, Fibrisoma limi strain BUZ 3, Flexibacteraceae bacterium BUZ 3
Server load: low (10%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.