STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BN8_01033RNA polymerase, sigma-24 subunit, ECF subfamily; Belongs to the sigma-70 factor family. ECF subfamily. (221 aa)    
Predicted Functional Partners:
BN8_01032
anti-FecI sigma factor, FecR.
 
   0.931
BN8_01191
anti-FecI sigma factor, FecR.
  
   0.785
BN8_00145
anti-FecI sigma factor, FecR.
  
   0.780
BN8_02008
anti-FecI sigma factor, FecR.
  
   0.779
BN8_02538
anti-FecI sigma factor, FecR.
  
   0.776
BN8_00696
anti-FecI sigma factor, FecR.
  
   0.765
BN8_02465
anti-FecI sigma factor, FecR.
  
   0.765
BN8_00124
anti-FecI sigma factor, FecR.
  
   0.759
BN8_04858
anti-FecI sigma factor, FecR.
  
   0.749
BN8_04313
anti-FecI sigma factor, FecR.
  
   0.738
Your Current Organism:
Fibrisoma limi
NCBI taxonomy Id: 1185876
Other names: F. limi BUZ 3, Fibrisoma limi BUZ 3, Fibrisoma limi str. BUZ 3, Fibrisoma limi strain BUZ 3, Flexibacteraceae bacterium BUZ 3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.