STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BN8_01372Phytochrome-like protein cph1. (1025 aa)    
Predicted Functional Partners:
BN8_03738
Multi-sensor hybrid histidine kinase.
 
 
 0.948
BN8_03739
PAS/PAC sensor hybrid histidine kinase.
 
 
0.917
BN8_03224
PAS/PAC sensor hybrid histidine kinase.
 
 
0.915
BN8_03319
Multi-sensor hybrid histidine kinase.
 
 
0.909
BN8_02721
Multi-sensor hybrid histidine kinase.
 
 
0.856
BN8_04381
Multi-sensor hybrid histidine kinase.
 
 
0.853
PAS
Multi-sensor hybrid histidine kinase.
 
 
0.853
BN8_04865
Hypothetical protein.
   
 0.835
BN8_03088
Chemotaxis protein methyltransferase CheR.
 
 
0.831
BN8_00474
GAF sensor hybrid histidine kinase.
   
0.826
Your Current Organism:
Fibrisoma limi
NCBI taxonomy Id: 1185876
Other names: F. limi BUZ 3, Fibrisoma limi BUZ 3, Fibrisoma limi str. BUZ 3, Fibrisoma limi strain BUZ 3, Flexibacteraceae bacterium BUZ 3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.