STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BN8_01401Putative nucleic acid-binding protein. (142 aa)    
Predicted Functional Partners:
BN8_01400
Hypothetical protein.
       0.773
BN8_03745
Protein of unknown function DUF433.
  
     0.666
BN8_04610
Protein of unknown function DUF433.
  
     0.663
BN8_03744
Hypothetical protein.
  
   
 0.634
BN8_05113
Hypothetical protein.
  
     0.614
BN8_00440
Uncharacterized protein conserved in cyanobacteria.
  
     0.576
BN8_03895
Uncharacterized protein conserved in cyanobacteria.
  
     0.576
BN8_04767
Uncharacterized protein conserved in cyanobacteria.
  
     0.556
mnmA
tRNA(5-methylaminomethyl-2-thiouridylate)- methyltransferase; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.
       0.552
BN8_01398
Protein of unknown function DUF1080.
       0.470
Your Current Organism:
Fibrisoma limi
NCBI taxonomy Id: 1185876
Other names: F. limi BUZ 3, Fibrisoma limi BUZ 3, Fibrisoma limi str. BUZ 3, Fibrisoma limi strain BUZ 3, Flexibacteraceae bacterium BUZ 3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.