STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
matEMultidrug export protein mepA. (456 aa)    
Predicted Functional Partners:
BN8_06179
Squalene/phytoene synthase.
   
 
 0.787
BN8_02482
Glyceraldehyde-3-phosphate dehydrogenase, type I; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
   
    0.580
BN8_03958
Glyceraldehyde-3-phosphate dehydrogenase (phosphorylating); Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
   
    0.580
rpsA1
30S ribosomal protein S1.
   
    0.579
rpsA3
30S ribosomal protein S1.
   
    0.579
BN8_01442
Hypothetical protein.
       0.529
rplR
Ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.
     
 0.401
Your Current Organism:
Fibrisoma limi
NCBI taxonomy Id: 1185876
Other names: F. limi BUZ 3, Fibrisoma limi BUZ 3, Fibrisoma limi str. BUZ 3, Fibrisoma limi strain BUZ 3, Flexibacteraceae bacterium BUZ 3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.