STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BN8_01837Sugar isomerase (SIS). (185 aa)    
Predicted Functional Partners:
BN8_00667
Hydrolase, HAD-superfamily, subfamily IIIA.
 
 0.976
BN8_04272
rfaE bifunctional protein; Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno-heptose.
  
 0.976
hddA
Hypothetical protein; Predicted kinase related to galactokinase and mevalonate kinase.
 
 0.962
BN8_05970
Hydrolase, HAD-superfamily, subfamily IIIA.
 
 0.938
BN8_05329
PfkB domain protein.
 
  
 0.932
BN8_03165
PfkB domain protein.
 
  
 0.907
BN8_00668
Glycosyl transferase group 1.
 
     0.874
hisB
Histidinol-phosphatase; In the C-terminal section; belongs to the imidazoleglycerol-phosphate dehydratase family.
  
 
 0.764
BN8_00663
Glycosyl transferase family 9.
 
  
 0.733
BN8_00666
Glycosyl transferase family 9.
 
  
 0.729
Your Current Organism:
Fibrisoma limi
NCBI taxonomy Id: 1185876
Other names: F. limi BUZ 3, Fibrisoma limi BUZ 3, Fibrisoma limi str. BUZ 3, Fibrisoma limi strain BUZ 3, Flexibacteraceae bacterium BUZ 3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.