STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BN8_02293L-rhamnose 1-epimerase; Involved in the anomeric conversion of L-rhamnose. (104 aa)    
Predicted Functional Partners:
BN8_03874
Carbohydrate kinase FGGY.
 
  
 0.882
BN8_03876
Rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
 
  
 0.823
BN8_02292
PKD domain containing protein.
       0.762
BN8_03875
Xylose isomerase domain protein TIM barrel.
 
   
 0.727
BN8_03556
Hypothetical protein.
 
     0.694
BN8_00226
Carbohydrate kinase, FGGY-like protein.
  
  
 0.612
BN8_05331
Carbohydrate kinase, FGGY-like protein.
  
  
 0.612
BN8_02294
Hypothetical protein.
       0.610
BN8_04360
L-rhamnose-H+ transport protein.
 
   
 0.532
BN8_02295
Hypothetical protein.
       0.529
Your Current Organism:
Fibrisoma limi
NCBI taxonomy Id: 1185876
Other names: F. limi BUZ 3, Fibrisoma limi BUZ 3, Fibrisoma limi str. BUZ 3, Fibrisoma limi strain BUZ 3, Flexibacteraceae bacterium BUZ 3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.