STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BN8_02305Beta-lactamase. (524 aa)    
Predicted Functional Partners:
BN8_02306
Putative protein yfnF.
 
     0.662
BN8_00835
D-alanyl-D-alanine carboxypeptidase Short=DD-carboxypeptidase.
  
     0.590
BN8_02307
dTDP-rhamnosyl transferase rfbG.
       0.525
BN8_04612
Glyoxalase/bleomycin resistance protein/dioxygenase.
  
     0.486
guaA
GMP synthase, large subunit; Catalyzes the synthesis of GMP from XMP.
     
 0.482
BN8_04635
Peptidase M15D vanX D-ala-D-ala dipeptidase; Catalyzes hydrolysis of the D-alanyl-D-alanine dipeptide.
      0.440
BN8_01759
Aminotransferase class V.
  
     0.431
BN8_02150
Peptidase M20.
  
     0.422
Your Current Organism:
Fibrisoma limi
NCBI taxonomy Id: 1185876
Other names: F. limi BUZ 3, Fibrisoma limi BUZ 3, Fibrisoma limi str. BUZ 3, Fibrisoma limi strain BUZ 3, Flexibacteraceae bacterium BUZ 3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.